Biosphera Scientific Days: first edition

Published: Oct 14, 2022 by FME Lab

The first Biosphera Scientific Days were held on October 13 and 14, 2022 on the Campus Agro Paris-Saclay. Dedicated to the launch of its eight thematic programs with scientific presentations and workshops led by the coordinators of these programs (Stéphane from FME & Ariane Bize from PROSE Unit presented the coordination of the Microorganisms program).

the Biosphera 2022 Scientific Days brought together nearly 200 participants, including 95 master’s students. This participation reflects the links between research and education that Biosphera is building.

These days were also an opportunity to exchange on scientific results through posters. Congratulations to Sybille Tabuteau (FME master2 student) who was the winner in the Master category with our poster entitled : Food-Borne Bacteria Undercover - MAGs (metagenome-assembled genomes) can reveal biases in cultured food bacterial isolates and help identifying new species and strains.

A short video of the event here :

https://cirrus.universite-paris-saclay.fr/s/fzbfM9xnMiWg24B

cFMD workshop in Trento

Last February 23-24th 2026, at University of Trento, a workshop was organized by the CIBIO (Nicola Segata’s lab) for #DominoEU partners. The workshop aimed at learning to query & analyse data from the Curated Food Microbiome Database (cFMD). Thanks to the very efficient and skilled teaching team (vitor Heidrich, Hrituraj Dey, Francesco aniscar, Sergio Andrés Castañeda Garzon) and for the incredible hospitality of Frederica Pinto and Nicola Segata.

From food spontaneous fermentations to food designed consortia

Our new article entitled “Microbiome metabolic modeling as a tool for innovation in fermented foods” has been published in in Current Opinion of Food Science¹.

Elham Karimi, Julien Tap, Marie-Christine Champomier-Vergès, Stéphane Chaillou. Microbiome metabolic modeling as a tool for innovation in fermented foods. Current Opinion of Food Science. 2025 ↩

The FME lab communicates about the links between the microbiome, nutrition and health.

On Thursday 27 November, the FME lab took part in the Food System Microbiomes Conference in Wageningen during the session dedicated to the connections between microbiomes, nutrition and health. The session was co-chaired by Stéphane Chaillou (INRAE, Micalis) and Prof. Christophe Courtin (KU Leuven), and provided an opportunity to showcase advances from two major European projects: DOMINO and HealthFerm.