Food microbial fluxes under the magnifying glass of multi-omic data integration

Published: Oct 18, 2023 by FME Lab

In our last article¹ published online this Wednesday 18th of October in frontiers in Microbiology, we demonstrate how an ambitious meta-omics sampling strategy can be holistically integrated to reveal the secrets of microbial flux within food production. Our paper focuses on spoilage scenarios in meat products, but the concept can be applied broadly to all types of food. We demonstrate that, in addition to studying the parameters influencing microbial flux, it is also possible to highlight certain metabolic interactions between micro-organisms. Many thanks to the ANR for funding this project, and a wave of congratulations to all our colleagues in this consortium.

Poirier, S. et al. Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios. Front. Microbiol. 14, 1286661 (2023). ↩

Health promoting effects of Fermented Foods was the highlight at 2nd Forum on Fermented Foods in Malaga

(#DominoEU researchers participated significantly to this amazing conference organised by the COST Pimento. Paul Cotter, Orla O’Sullivan, Jekaterina Kansatseva, Bastien Renard, Isabelle Savary-Auzeloux, Luca Cocolin, Kelly Rantsiou and Tanja Kostic gave talks.

Metagenomic driven isolation of poorly culturable species in food

A new article entitled “Metagenomic driven isolation of poorly culturable species in food” from Caroline and Pierre has been published in Food microbiology journal¹.

Kothe et al. *Metagenomic driven isolation of poorly culturable species in food. Food Microbiology. 2025 ↩

6th scientific meeting of ANR metasimfood project in Strasbourg

On Tuesday 7th of January, the 7 partners gathered for the second time in Illkirch (close to Strasbourg) and were hosted by Aérial. The meeting was focused on the main advances carried out on the fermented vegetables food model with exiting results confirming the hypothesis postulated earlier in the project. Also, the evening before the meeting, Aérial organized a specific visit of the largest Sauerkraut producer in France, at a small village 30 km south of Strasbourg.