Webinar on genome-scale modelling for consortia design

Published: May 28, 2024 by FME Lab

Last Tuesday 28th of May, Elham Karimi, Stephane Chaillou (Micalis, Food Microbial Ecology research group) and Valentin Loux (MaIAge) have organised in the frame of the #DominoEU project a webinar training session on genome-scale modelling (GSM).

This training aimed at performing the first cross-capacity building between two workpackages (WP3: Open access databases & computational tools) and (WP4: design of microbial consortia for sustainable plant-based fermented foods) and towards scientists from various background. GSM will be used in #DominoEU project for the design of microbial solution for various plant-based fermented food. Metagenomic and genomic data from samples and strains isolated at the beginning of the project will be used as template for this very challenging but exciting modelling. Next steps will be the GSM workshop 24-26th of June in INRAE Jouy-en-Josas.

Special thanks to the participants: Pascal Bonnarme, Vincent Hervé, Ayité Adama, Sophie Schbath (INRAE) ; Ilaria Ferrocino, Kelly Rantsiou (UNITO) ; Abelardo Margolles, Pedro Riesco, Lorena Ruiz (CSIC) ; Bastien Renard, Christèle Humblot (IRD) ; John Kenny, Katie O’Mahony, Anik Khan (TEAGASC) ; Jekaterina Kazantseva (TFAK) ; Claudia Mengoni, Hriturak Dey (UNITN) ; Tanja Kostic (AIT).

A seed meeting between INRAE Micalis Institute and Imperial College London

Last week on October 3rd, scientists from Imperial College London (ICL) and from INRAE Micalis Institute were hosted by the French embassy in London for a seed meeting around synthetic biology and synthetic microbial ecology as scientific strategies for biotechnology and food production. A special thanks to the organizer: Ludovic Drouin (French Embassy), Young-Kyoung Park (Micalis) and Rodriguo Ledesma-Amaro (ICL). Our several groups with complementary research discussed about perspectives of future collaborations on the field together with Ferment du Futur or Bezos Centre.

School of Artificial Intelligence Applied to Microbiomes

Earlier this month, Julien had the pleasure of participating as a lecturer at the School of Artificial Intelligence Applied to Microbiomes, hosted at AgroParisTech and organized by Aristeidis Litos, Daniel Garza, and Ariane Bize. The event brought together an exceptional group of researchers and students exploring how AI, data science, and mathematical modeling are reshaping our understanding of microbial ecosystems.

Consumers at the core of fermented food innovation

Yesterday on September 23rd, about 100 participants from academia, industry, NGOs and policy makers across Europe had joined the second Stakeholder Forum of Horizon Europe #DominoEU project. Four speakers Pr. Jutta Roosen from the Technical Universty of Munich, Dr. Emmanuella Magriplis associate professor from the Agricultural University of Athens, Dr. Michail Syrpas associate professor at Kaunas University of Technology in Lithuania and Dr. Nikoletta Vidra Science Manager at Yakult Europe altogether spotlighted the central role of consumer research in advancing the field of fermented foods.