FME at Bioket 2026 advancing synthetic microbial ecology for sustainable food

Published: Mar 19, 2026 by FME Lab

At the BIOKET (Bioeconomy Key Enabling Technologies) conference in Fribourg, Julien presented recent advances from the SynthPlex project, positioning synthetic microbial ecology as a core tool for next-generation fermented foods.

The session, chaired by Damien Paineau, Ferments du Future CEO, brought together researchers and industry leaders working on biotechnology and sustainable food systems. Discussions spanned microbial fermentation, cellular agriculture, and scalable production systems, highlighting convergence across disciplines.

The BIOKET session emphasized a shared constraint across technologies: scaling from lab to industry. As highlighted by sessions speakers, success depends on robust bioprocess design, scalable production systems, and strong public–private partnerships. Within this landscape, SynthPlex contributes a complementary approach: engineering microbial ecosystems rather than single strains or cell lines. The long-term objective is clear: design fermented foods that are both functional and microbiome-aware, using rationally assembled microbial communities adapted to plant substrates.

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FME at Bioket 2026 advancing synthetic microbial ecology for sustainable food
FME at Bioket 2026 advancing synthetic microbial ecology for sustainable food

At the BIOKET (Bioeconomy Key Enabling Technologies) conference in Fribourg, Julien presented recent advances from the SynthPlex project, positioning synthetic microbial ecology as a core tool for next-generation fermented foods.

cFMD workshop in Trento
cFMD workshop in Trento

Last February 23-24th 2026, at University of Trento, a workshop was organized by the CIBIO (Nicola Segata’s lab) for #DominoEU partners. The workshop aimed at learning to query & analyse data from the Curated Food Microbiome Database (cFMD). Thanks to the very efficient and skilled teaching team (vitor Heidrich, Hrituraj Dey, Francesco aniscar, Sergio Andrés Castañeda Garzon) and for the incredible hospitality of Frederica Pinto and Nicola Segata.

From food spontaneous fermentations to food designed consortia
From food spontaneous fermentations to food designed consortia

Our new article entitled “Microbiome metabolic modeling as a tool for innovation in fermented foods” has been published in in Current Opinion of Food Science1.

  1. Elham Karimi, Julien Tap, Marie-Christine Champomier-Vergès, Stéphane Chaillou. Microbiome metabolic modeling as a tool for innovation in fermented foods. Current Opinion of Food Science. 2025